Alvarez-Dominguez, J.R., Winther, S., Hansen, J.B., Lodish, H.F., and Knoll, M. (2021). An adipose lncRAP2 - Igf2bp2 complex enhances adipogenesis and energy expenditure by stabilizing target mRNAs. iScience 25, 103680.

Alvarez-Dominguez, J.R.*, and Melton, D.A. (2022). Cell Maturation: Hallmarks, Triggers, and Manipulation. Cell 185, 1. PMID: 34995481.

Alvarez-Dominguez, J.R.*, Donaghey, J., Rasouli, N., Kenty, J.H.R., Helman, A., Charlton, J., Straubhaar, J.R., Meissner, A., and Melton, D.A. (2020).   Organoid Maturation by Circadian Entrainment. StemJournal 2, 7-13.
     Highlighted in: McNamara, C. (2020). Author Q&A. StemJournal

Alvarez-Dominguez, J.R.*, and Melton, D.A. (2021). Cell maturation. Cell [invited review].

Alvarez-Dominguez, J.R.*, Montalvo, A.P., Kenty, J.H.R., Straubhaar, J.R., and Melton, D.A. (2021). Dec1 links circadian rhythms to pancreatic islet   maturation. Submitted.

Rasouli N., Melton, D.A., and Alvarez-Dominguez, J.R.* (2020). Purification of live stem cell-derived islet lineage intermediates. Curr Protoc Stem Cell   Biol, 53, e111. PMID: 32521122

Alvarez-Dominguez, J.R., Donaghey, J., Rasouli N., Kenty, J.H.R., Helman, A., Charlton J., Straubhaar, J.R., Meissner, A., and Melton, D.A. (2019).   Circadian Entrainment Triggers Maturation of Human in vitro Islets. Cell Stem Cell 26, 108-122 e110. PMID: 31839570
   Highlighted in: Andersen, B., Lin, Z. (2020).    Evaluation of Alvarez-Dominguez et al. Cell Stem Cell 26, 1, Stem Cell Podcast, The Stem Cell Group,    Topbiopapers, Society for Research on    Biological Rhythms Outreach.

Jiang, M., Alvarez-Dominguez, J.R., Yuan, B., and Lodish, H.F. (2019). LncRNA Hoxc4-au inhibits visceral and promotes subcutaneous adipogenesis.   Under review.

Xu, D., Xu, S., Kyaw, A.M.M., Lim, Y.C., Chia, S.Y., Chee Siang, D.T., Alvarez-Dominguez, J.R., Chen, P., Leow, M.K., and Sun, L. (2017). RNA Binding   Protein Ybx2 Regulates RNA Stability During Cold-Induced Brown Fat Activation. Diabetes 66, 2987-3000. PMID: 28970281

Alvarez-Dominguez, J.R.*, and Lodish, H.F. (2017). Emerging mechanisms of long noncoding RNA function during normal and malignant   hematopoiesis. Blood 130, 1965-1975. PMID: 28928124

Alvarez-Dominguez, J.R.*, Knoll, M., Gromatzky, A.A., and Lodish, H.F. (2017). The Super-Enhancer-Derived alncRNA-EC7/Bloodlinc Potentiates Red   Blood Cell Development in trans. Cell Reports 19, 2503–2514.
   Highlighted: Espinosa, J.M. (2017). On the Origin of lncRNAs: Missing Link Found.   Trends Genet 33, 660-662. PMID: 28636939

Alvarez-Dominguez, J.R.*, Zhang, X., and Hu, W. (2017). Widespread and dynamic translational control of red blood cell development. Blood 129,   619-629. PMID: 27899360
   Highlighted in: Warren, A.J. (2017). Decoding erythropoiesis. Blood 129, 544-545. DOI: 10.1182/blood-2016-12-755538

Atianand, M.K., Hu, W., Satpathy, A.T., Shen, Y., Ricci, E.P., Alvarez-Dominguez, J.R., Bhatta, A., Schattgen, S.A., McGowan, J.D., Blin, J., et al. (2016). A   Long Noncoding RNA lincRNA-EPS Acts as a Transcriptional Brake to Restrain Inflammation. Cell 165, 1672-1685 PMID: 27315481.
   Highlighted in: Lu, C. (2016). Curb   Your Inflammation. Cell 165, 1553-1555, Science Daily, and Newswise. DOI: 10.1016/j.cell.2016.06.013

Alvarez-Dominguez, J.R.*, and Lodish, H.F. (2016). Unravelling of the role of long noncoding RNAs in haematopoiesis. ISBT Science Series 11, 188-   195.

Russell, M.R., Penikis, A., Oldridge, D.A., Alvarez-Dominguez, J.R., McDaniel, L., Diamond, M., Padovan, O., Raman, P., Li, Y., Wei, J.S., et al. (2015).   CASC15-S Is a Tumor Suppressor lncRNA at the 6p22 Neuroblastoma Susceptibility Locus. Cancer Research 75, 3155-3166.
  PMID: 26100672

Amosova, O., Alvarez-Dominguez, J.R.*, and Fresco, J.R. (2015). Why the DNA self-depurination mechanism operates in HB-beta but not in beta-   globin paralogs HB-delta, HB-varepsilon1, HB-gamma1 and HB-gamma2. Mutation Research 778, 11-17 PMID: 26042536.

Alvarez-Dominguez, J.R., Bai, Z., Xu, D., Yuan, B., Lo, K.A., Yoon, M.J., Lim, Y.C., Knoll, M., Slavov, N., Chen, S., et al. (2015). De Novo Reconstruction of   Adipose Tissue Transcriptomes Reveals Long Non-coding RNA Regulators of Brown Adipocyte Development. Cell Metabolism 21, 764-776.    Highlighted in: Futurity (2015). RNA catalogue reveals key to brown fat. PMID: 25921091

Smith, J., Alvarez-Dominguez, J.R., Kline, N., Huynh, N., Geisler, S., Hu, W., Coller, J., and Baker, K.E. (2014). Translation of small open reading frames   within unannotated RNA transcripts in Saccharomyces cerevisiae. Cell Reports 7, 1858-1866. PMID: 24931603

Alvarez-Dominguez, J.R., Hu, W., Gromatzky, A.A., and Lodish, H.F. (2014). Long noncoding RNAs during normal and malignant hematopoiesis. Int J   Hematol 99, 531-541. PMID: 24609766

Alvarez-Dominguez, J.R., Hu, W., Yuan, B., Shi, J., Park, S.S., Gromatzky, A.A., van Oudenaarden, A., and Lodish, H.F. (2014). Global discovery of   erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Blood 123, 570-581. PMID: 24200680
   Highlighted in: Gallagher, P.G. (2014). Long   noncoding RNAs in erythropoiesis. Blood 123, 465-466. Coetzer, T. (2014). Red Cells, RNA, and Regulation: The Plot Thickens. The Hematologist 11,   10 DOI: 10.1182/blood-2013-10-530683

Caudy, A.A., Guan, Y., Jia, Y., Hansen, C., DeSevo, C., Hayes, A.P., Agee, J., Alvarez-Dominguez, J.R., Arellano, H., Barrett, D., et al. (2013). A new system   for comparative functional genomics of Saccharomyces yeasts. Genetics 195, 275-287. PMID: 23852385

Alvarez-Dominguez, J.R.*, Amosova, O., Fresco, J.R. (2013). Self-catalytic DNA depurination underlies human beta-globin gene mutations at codon 6 that cause anemias and thalassemias. J Biol Chem 288, 11581-11589. PMID: 23457306

Hu, W., Alvarez-Dominguez, J.R., and Lodish, H.F. (2012). Regulation of mammalian cell differentiation by long non-coding RNAs. EMBO Rep 13, 971-   983. PMID: 23070366

Book chapters

Alvarez-Dominguez, J.R., Hu, W., and Lodish, H.F. (2013). Regulation of Eukaryotic Cell Differentiation by Long Noncoding RNAs. Molecular Biology of   Long Non-coding RNAs, 15-67. (New York: Springer Science).

Fresco, J.R., Amosova, O., Wei, P., Alvarez-Dominguez, J.R., Glumcher, D., and Torres, R. (2011). Site-Specific Self-Catalyzed DNA Depurination, the   Basis of a Spontaneous Mutagenic Mechanism of Wide Evolutionary Significance. Evolutionary Biology: Concepts, Biodiversity, Macroevolution and   Genome Evolution, 3-19. (Springer-Verlag Berlin).